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If I were to guess I would say you are either having some side effects from taking the diflucan for an extended period or your yeast has become resistant against it and its no long working. I would stop the diflucan, there are numerous natural anti-fungals you can take that are just as effective without side effects.
You need to make sure you rotate anti-fungals though as the yeast will become resistant to the same ones if you take them for too long.